IL_8UJK_041

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CGAC*GGUCG

Length

9 nucleotides

Bulged bases

8UJK|1|L5|C|1202

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_041 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2483

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8UJK|1|L5|C|1093
8UJK|1|L5|G|1094
8UJK|1|L5|A|1095
8UJK|1|L5|C|1096
*
8UJK|1|L5|G|1199
8UJK|1|L5|G|1200
8UJK|1|L5|U|1201
8UJK|1|L5|C|1202
8UJK|1|L5|G|1203

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21