IL_8UJK_079

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8UJK|1|L5|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_079 not in the Motif Atlas

Homologous match to IL_8P9A_281

Geometric discrepancy: 0.1147

The information below is about IL_8P9A_281

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8UJK|1|L5|G|1946
8UJK|1|L5|U|1947
8UJK|1|L5|G|1948
*
8UJK|1|L5|C|2035
8UJK|1|L5|C|2036

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LH

60S ribosomal protein L9

Chain LS

60S ribosomal protein L18a

Chain Lm

Large ribosomal subunit protein eL40