IL_8UJK_082

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8UJK|1|L5|G|1975

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_082 not in the Motif Atlas

Homologous match to IL_8CRE_058

Geometric discrepancy: 0.3586

The information below is about IL_8CRE_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.2

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8UJK|1|L5|G|1973
8UJK|1|L5|U|1974
8UJK|1|L5|G|1975
8UJK|1|L5|G|1976
8UJK|1|L5|C|1977
*
8UJK|1|L5|G|1989
8UJK|1|L5|A|1990
8UJK|1|L5|A|1991
8UJK|1|L5|U|1992
8UJK|1|L5|C|1993

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

Large ribosomal subunit protein uL11