Motif IL_16218.2 Version IL_16218.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 5-6 | 8-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8CRE_058 | 8CRE | 0.4015 | 1 | 1 | LSU rRNA | G | 1246 | A | 1247 | A | 1248 | U | 1249 | C | 1250 | * | G | 1230 | U | 1231 | G | 1233 | C | 1234 | cWW | cWW | ||
| 2 | IL_8P9A_283 | 8P9A | 0.0000 | 1 | AR | LSU rRNA | G | 1250 | A | 1251 | A | 1252 | U | 1253 | C | 1254 | * | G | 1234 | U | 1235 | G | 1237 | C | 1238 | cWW | ncWW | cWW | |
| 3 | IL_7A0S_039 | 7A0S | 0.8452 | 1 | X | LSU rRNA | C | 1087 | A | 1088 | C | 1089 | C | 1090 | C | 1091 | * | G | 1070 | U | 1071 | G | 1073 | G | 1074 | cWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAUC*GUGGC | 2 |
| CACCC*GUUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAU*UGG | 2 |
| ACC*UUG | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Heat map statistics
- Min 0.40 | Avg 0.47 | Max 0.89
Coloring options: