IL_8UJK_118

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8UJK|1|L5|A|3712

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_118 not in the Motif Atlas

Homologous match to IL_8CRE_092

Geometric discrepancy: 0.4927

The information below is about IL_8CRE_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8UJK|1|L5|G|3710
8UJK|1|L5|A|3711
8UJK|1|L5|A|3712
8UJK|1|L5|U|3713
8UJK|1|L5|G|3714
*
8UJK|1|L5|C|3739
8UJK|1|L5|G|3740
8UJK|1|L5|C|3741

Current chains

Chain L5

28S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA