IL_8UJK_120

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_120 not in the Motif Atlas

Geometric match to IL_8CRE_094

Geometric discrepancy: 0.0848

The information below is about IL_8CRE_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8UJK|1|L5|G|3780
8UJK|1|L5|C|3781
*
8UJK|1|L5|G|3811
8UJK|1|L5|C|3812
8UJK|1|L5|A|3813
8UJK|1|L5|U|3814

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Pt

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA