IL_8UJK_135

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

8UJK|1|L5|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_135 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.1831

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8UJK|1|L5|G|4347
8UJK|1|L5|A|4348
8UJK|1|L5|C|4349
8UJK|1|L5|C|4350
*
8UJK|1|L5|G|4364
8UJK|1|L5|C|4365

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a

Chain Lo

60S ribosomal protein L36a