IL_8UJK_146

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

8UJK|1|L5|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_146 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3908

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

8UJK|1|L5|U|4468
8UJK|1|L5|U|4469
8UJK|1|L5|G|4470
*
8UJK|1|L5|C|4485
8UJK|1|L5|C|4486
8UJK|1|L5|A|4487
8UJK|1|L5|A|4488
8UJK|1|L5|G|4489

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Large ribosomal subunit protein eL40