IL_8UJK_186

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_186 not in the Motif Atlas

Homologous match to IL_8CRE_394

Geometric discrepancy: 0.0894

The information below is about IL_8CRE_394

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

8UJK|1|S2|C|49
8UJK|1|S2|A|50
8UJK|1|S2|U|51
*
8UJK|1|S2|A|476
8UJK|1|S2|G|477

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SY

40S ribosomal protein S24