IL_8UKB_014
3D structure
- PDB id
- 8UKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 8UKB|1|L5|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UKB_014 not in the Motif Atlas
- Geometric match to IL_1U9S_005
- Geometric discrepancy: 0.2171
- The information below is about IL_1U9S_005
- Detailed Annotation
- Minor groove platform, major groove intercalation
- Broad Annotation
- Minor groove platform, major groove intercalation
- Motif group
- IL_55206.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8UKB|1|L5|C|339
8UKB|1|L5|C|340
8UKB|1|L5|G|341
8UKB|1|L5|G|342
*
8UKB|1|L8|C|32
8UKB|1|L8|G|33
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA [Homo sapiens]
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- 60S ribosomal protein L15
- Chain Lj
- 60S ribosomal protein L37
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