IL_8UKB_023

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

8UKB|1|L5|G|483, 8UKB|1|L5|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UKB_023 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.196

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8UKB|1|L5|G|482
8UKB|1|L5|G|483
8UKB|1|L5|U|484
8UKB|1|L5|C|485
*
8UKB|1|L5|G|671
8UKB|1|L5|C|672

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lr

60S ribosomal protein L28