IL_8UKB_101

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

8UKB|1|L5|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UKB_101 not in the Motif Atlas

Geometric match to IL_4WF9_041

Geometric discrepancy: 0.1925

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8UKB|1|L5|G|2542
8UKB|1|L5|A|2543
8UKB|1|L5|G|2544
8UKB|1|L5|U|2545
8UKB|1|L5|G|2546
8UKB|1|L5|G|2547
*
8UKB|1|L5|C|2772
8UKB|1|L5|G|2773
8UKB|1|L5|C|2774

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lk

60S ribosomal protein L38