IL_8UKB_114

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8UKB|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UKB_114 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0882

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8UKB|1|L5|C|2867
8UKB|1|L5|G|2868
8UKB|1|L5|U|2869
8UKB|1|L5|A|2870
8UKB|1|L5|A|2871
8UKB|1|L5|C|2872
*
8UKB|1|L5|G|2877
8UKB|1|L5|G|2878
8UKB|1|L5|A|2879
8UKB|1|L5|U|2880
8UKB|1|L5|A|2881
8UKB|1|L5|A|2882
8UKB|1|L5|G|2883

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA