IL_8UKB_127
3D structure
- PDB id
- 8UKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8UKB|1|L5|A|3785, 8UKB|1|L5|C|3791, 8UKB|1|L5|C|3810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UKB_127 not in the Motif Atlas
- Homologous match to IL_8C3A_095
- Geometric discrepancy: 0.0931
- The information below is about IL_8C3A_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8UKB|1|L5|C|3781
8UKB|1|L5|C|3782
8UKB|1|L5|A|3783
8UKB|1|L5|A|3784
8UKB|1|L5|A|3785
8UKB|1|L5|U|3786
8UKB|1|L5|G|3787
8UKB|1|L5|C|3788
8UKB|1|L5|C|3789
8UKB|1|L5|U|3790
8UKB|1|L5|C|3791
8UKB|1|L5|G|3792
*
8UKB|1|L5|C|3808
8UKB|1|L5|G|3809
8UKB|1|L5|C|3810
8UKB|1|L5|G|3811
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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