IL_8UKB_143

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8UKB|1|L5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UKB_143 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.1716

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8UKB|1|L5|G|4405
8UKB|1|L5|U|4406
8UKB|1|L5|G|4407
*
8UKB|1|L5|U|4435
8UKB|1|L5|U|4436
8UKB|1|L5|U|4437
8UKB|1|L5|U|4438
8UKB|1|L5|U|4439

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LI

Ribosomal protein uL16-like