IL_8UKB_216
3D structure
- PDB id
- 8UKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UKB_216 not in the Motif Atlas
- Homologous match to IL_8C3A_423
- Geometric discrepancy: 0.1048
- The information below is about IL_8C3A_423
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.2
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8UKB|1|S2|A|599
8UKB|1|S2|G|600
8UKB|1|S2|G|601
8UKB|1|S2|G|602
8UKB|1|S2|C|603
8UKB|1|S2|A|604
8UKB|1|S2|A|605
8UKB|1|S2|G|606
*
8UKB|1|S2|C|636
8UKB|1|S2|U|637
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CD
- Serbp1
- Chain SC
- 40S ribosomal protein S2
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- Small ribosomal subunit protein eS30
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