IL_8UKB_218
3D structure
- PDB id
- 8UKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8UKB|1|S2|A|628, 8UKB|1|S2|U|630, 8UKB|1|S2|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UKB_218 not in the Motif Atlas
- Homologous match to IL_8P9A_404
- Geometric discrepancy: 0.2326
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UKB|1|S2|G|611
8UKB|1|S2|U|612
8UKB|1|S2|G|613
8UKB|1|S2|C|614
8UKB|1|S2|C|615
8UKB|1|S2|A|616
8UKB|1|S2|G|617
*
8UKB|1|S2|C|624
8UKB|1|S2|G|625
8UKB|1|S2|G|626
8UKB|1|S2|U|627
8UKB|1|S2|A|628
8UKB|1|S2|A|629
8UKB|1|S2|U|630
8UKB|1|S2|U|631
8UKB|1|S2|C|632
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CB
- Elongation factor 2
- Chain CD
- Serbp1
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- Small ribosomal subunit protein eS30
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