IL_8UKB_245

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UKB_245 not in the Motif Atlas

Homologous match to IL_8C3A_451

Geometric discrepancy: 0.1155

The information below is about IL_8C3A_451

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_92540.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

32

Unit IDs

8UKB|1|S2|G|1235
8UKB|1|S2|G|1236
*
8UKB|1|S2|C|1521
8UKB|1|S2|A|1522
8UKB|1|S2|C|1523

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CD

Serbp1

Chain SP

Small ribosomal subunit protein uS19

Chain SS

40S ribosomal protein S18