IL_8UKB_259
3D structure
- PDB id
- 8UKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- ACUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- 8UKB|1|S2|C|1403, 8UKB|1|S2|U|1404
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UKB_259 not in the Motif Atlas
- Homologous match to IL_8C3A_462
- Geometric discrepancy: 0.1738
- The information below is about IL_8C3A_462
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25234.1
- Basepair signature
- cWW-cSH-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8UKB|1|S2|A|1402
8UKB|1|S2|C|1403
8UKB|1|S2|U|1404
8UKB|1|S2|A|1405
*
8UKB|1|S2|U|1441
8UKB|1|S2|U|1442
8UKB|1|S2|C|1443
8UKB|1|S2|U|1444
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain SU
- 40S ribosomal protein S20
- Chain Sg
- Receptor of activated protein C kinase 1
Coloring options: