IL_8UMF_005
3D structure
- PDB id
- 8UMF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PsCas9 in complex with gRNA and DNA in product state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCUACU*AUC
- Length
- 9 nucleotides
- Bulged bases
- 8UMF|1|B|U|101, 8UMF|1|B|U|115
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UMF_005 not in the Motif Atlas
- Geometric match to IL_8HNT_002
- Geometric discrepancy: 0.3262
- The information below is about IL_8HNT_002
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.13
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 23
Unit IDs
8UMF|1|B|G|99
8UMF|1|B|C|100
8UMF|1|B|U|101
8UMF|1|B|A|102
8UMF|1|B|C|103
8UMF|1|B|U|104
*
8UMF|1|B|A|114
8UMF|1|B|U|115
8UMF|1|B|C|116
Current chains
- Chain B
- RNA (121-MER)
Nearby chains
- Chain A
- Cas9
- Chain D
- DNA (80-MER)
Coloring options: