IL_8UPO_026

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8UPO|1|D|A|572

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_026 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0814

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8UPO|1|D|C|569
8UPO|1|D|G|570
8UPO|1|D|U|571
8UPO|1|D|A|572
8UPO|1|D|A|573
8UPO|1|D|A|574
8UPO|1|D|G|575
*
8UPO|1|D|C|880
8UPO|1|D|G|881

Current chains

Chain D

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S8

Chain R

30S ribosomal protein S12

Chain V

30S ribosomal protein S17