IL_8UPO_050

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

8UPO|1|D|A|1196

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_050 not in the Motif Atlas

Homologous match to IL_5J7L_049

Geometric discrepancy: 0.1396

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8UPO|1|D|U|1060
8UPO|1|D|G|1061
*
8UPO|1|D|C|1195
8UPO|1|D|A|1196
8UPO|1|D|A|1197

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 21 nt long spacer

Chain I

30S ribosomal protein S3

Chain K

30S ribosomal protein S5

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14