IL_8UPO_061
3D structure
- PDB id
- 8UPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GUAC*GAAGUC
- Length
- 10 nucleotides
- Bulged bases
- 8UPO|1|D|A|1493
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UPO_061 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.4932
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8UPO|1|D|G|1405
8UPO|1|D|U|1406
8UPO|1|D|A|1408
8UPO|1|D|C|1409
*
8UPO|1|D|G|1491
8UPO|1|D|A|1492
8UPO|1|D|A|1493
8UPO|1|D|G|1494
8UPO|1|D|U|1495
8UPO|1|D|C|1496
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain 7
- mRNA with 21 nt long spacer
- Chain B
- Transfer RNA; tRNA
- Chain R
- 30S ribosomal protein S12
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: