IL_8UPO_075

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_075 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2466

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8UPO|1|a|C|274
8UPO|1|a|C|275
8UPO|1|a|U|276
8UPO|1|a|G|277
8UPO|1|a|A|278
8UPO|1|a|A|279
8UPO|1|a|U|280
8UPO|1|a|C|281
*
8UPO|1|a|G|359
8UPO|1|a|U|360
8UPO|1|a|G|361
8UPO|1|a|A|362
8UPO|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains