IL_8UPO_077

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8UPO|1|a|A|504, 8UPO|1|a|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_077 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0676

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8UPO|1|a|G|481
8UPO|1|a|A|482
8UPO|1|a|A|483
8UPO|1|a|C|484
*
8UPO|1|a|G|496
8UPO|1|a|A|497
8UPO|1|a|G|498
8UPO|1|a|U|499
8UPO|1|a|G|500
8UPO|1|a|A|501
8UPO|1|a|A|502
8UPO|1|a|A|503
8UPO|1|a|A|504
8UPO|1|a|A|505
8UPO|1|a|G|506
8UPO|1|a|A|507
8UPO|1|a|A|508
8UPO|1|a|C|509

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24