IL_8UPO_114
3D structure
- PDB id
- 8UPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UPO_114 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.0632
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8UPO|1|a|A|1262
8UPO|1|a|U|1263
8UPO|1|a|A|1264
8UPO|1|a|A|1265
8UPO|1|a|G|1266
8UPO|1|a|U|1267
8UPO|1|a|A|1268
8UPO|1|a|A|1269
*
8UPO|1|a|U|2011
8UPO|1|a|G|2012
8UPO|1|a|A|2013
8UPO|1|a|A|2014
8UPO|1|a|A|2015
8UPO|1|a|U|2016
8UPO|1|a|U|2017
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
- Chain l
- 50S ribosomal protein L4
Coloring options: