IL_8UPO_153

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

8UPO|1|a|A|2439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_153 not in the Motif Atlas

Homologous match to IL_5J7L_324

Geometric discrepancy: 0.095

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8UPO|1|a|A|2070
8UPO|1|a|A|2071
*
8UPO|1|a|U|2438
8UPO|1|a|A|2439
8UPO|1|a|C|2440
8UPO|1|a|U|2441

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2