IL_8UPO_164

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8UPO|1|a|U|2131, 8UPO|1|a|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPO_164 not in the Motif Atlas

Geometric match to IL_5J7L_330

Geometric discrepancy: 0.3002

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8UPO|1|a|C|2129
8UPO|1|a|U|2130
8UPO|1|a|U|2131
8UPO|1|a|U|2132
8UPO|1|a|G|2133
8UPO|1|a|A|2134
8UPO|1|a|A|2135
8UPO|1|a|G|2136
*
8UPO|1|a|U|2155
8UPO|1|a|G|2156
8UPO|1|a|G|2157
8UPO|1|a|A|2158
8UPO|1|a|G|2159

Current chains

Chain a

23S rRNA

Nearby chains