IL_8UPO_199

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGGAUAAC*GCUAAUACC

Length

17 nucleotides

Bulged bases

8UPO|1|D|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UPO|1|D|G|146
8UPO|1|D|G|147
8UPO|1|D|G|148
8UPO|1|D|A|149
8UPO|1|D|U|150
8UPO|1|D|A|151
8UPO|1|D|A|152
8UPO|1|D|C|153
*
8UPO|1|D|G|168
8UPO|1|D|C|169
8UPO|1|D|U|170
8UPO|1|D|A|171
8UPO|1|D|A|172
8UPO|1|D|U|173
8UPO|1|D|A|174
8UPO|1|D|C|175
8UPO|1|D|C|176

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20