IL_8UPR_070
3D structure
- PDB id
- 8UPR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GUAAG*CGUUAUAAC
- Length
- 14 nucleotides
- Bulged bases
- 8UPR|1|a|U|102
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UPR_070 not in the Motif Atlas
- Homologous match to IL_5J7L_248
- Geometric discrepancy: 0.0856
- The information below is about IL_5J7L_248
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_37015.1
- Basepair signature
- cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8UPR|1|a|G|81
8UPR|1|a|U|82
8UPR|1|a|A|83
8UPR|1|a|A|84
8UPR|1|a|G|85
*
8UPR|1|a|C|97
8UPR|1|a|G|98
8UPR|1|a|U|99
8UPR|1|a|U|100
8UPR|1|a|A|101
8UPR|1|a|U|102
8UPR|1|a|A|103
8UPR|1|a|A|104
8UPR|1|a|C|105
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L24
- Chain e
- 50S ribosomal protein L29
Coloring options: