IL_8UPR_077

3D structure

PDB id

8UPR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8UPR|1|a|A|504, 8UPR|1|a|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UPR_077 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0676

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8UPR|1|a|G|481
8UPR|1|a|A|482
8UPR|1|a|A|483
8UPR|1|a|C|484
*
8UPR|1|a|G|496
8UPR|1|a|A|497
8UPR|1|a|G|498
8UPR|1|a|U|499
8UPR|1|a|G|500
8UPR|1|a|A|501
8UPR|1|a|A|502
8UPR|1|a|A|503
8UPR|1|a|A|504
8UPR|1|a|A|505
8UPR|1|a|G|506
8UPR|1|a|A|507
8UPR|1|a|A|508
8UPR|1|a|C|509

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24