IL_8UPR_200

3D structure

PDB id

8UPR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGGAUAAC*GCUAAUACC

Length

17 nucleotides

Bulged bases

8UPR|1|D|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UPR|1|D|G|146
8UPR|1|D|G|147
8UPR|1|D|G|148
8UPR|1|D|A|149
8UPR|1|D|U|150
8UPR|1|D|A|151
8UPR|1|D|A|152
8UPR|1|D|C|153
*
8UPR|1|D|G|168
8UPR|1|D|C|169
8UPR|1|D|U|170
8UPR|1|D|A|171
8UPR|1|D|A|172
8UPR|1|D|U|173
8UPR|1|D|A|174
8UPR|1|D|C|175
8UPR|1|D|C|176

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20