IL_8UQL_156

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGA*UUGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UQL_156 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.3115

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8UQL|1|a|U|2098
8UQL|1|a|U|2099
8UQL|1|a|G|2100
8UQL|1|a|A|2101
*
8UQL|1|a|U|2188
8UQL|1|a|U|2189
8UQL|1|a|G|2190
8UQL|1|a|A|2191

Current chains

Chain a

23S rRNA

Nearby chains