3D structure

PDB id
8UQL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AUG*CUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UQL_160 not in the Motif Atlas
Geometric match to IL_4KZD_003
Geometric discrepancy: 0.1732
The information below is about IL_4KZD_003
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

8UQL|1|a|A|2108
8UQL|1|a|U|2109
8UQL|1|a|G|2110
*
8UQL|1|a|C|2179
8UQL|1|a|U|2180
8UQL|1|a|U|2181

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Transfer RNA; tRNA

Coloring options:


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