IL_8UQM_162

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

8UQM|1|a|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UQM|1|a|G|2123
8UQM|1|a|G|2124
8UQM|1|a|G|2125
8UQM|1|a|A|2126
8UQM|1|a|G|2127
*
8UQM|1|a|C|2161
8UQM|1|a|G|2162
8UQM|1|a|A|2163
8UQM|1|a|C|2164
8UQM|1|a|C|2165
8UQM|1|a|U|2166
8UQM|1|a|U|2167
8UQM|1|a|G|2168
8UQM|1|a|A|2169
8UQM|1|a|A|2170
8UQM|1|a|A|2171
8UQM|1|a|U|2172
8UQM|1|a|A|2173
8UQM|1|a|C|2174
8UQM|1|a|C|2175

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA