IL_8UQM_205

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GCAAGG*CCAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UQM_205 not in the Motif Atlas

Geometric match to IL_8C3A_028

Geometric discrepancy: 0.3944

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8UQM|1|a|G|875
8UQM|1|a|C|876
8UQM|1|a|A|877
8UQM|1|a|A|878
8UQM|1|a|G|879
8UQM|1|a|G|880
*
8UQM|1|a|C|897
8UQM|1|a|C|898
8UQM|1|a|A|899
8UQM|1|a|A|900
8UQM|1|a|C|901
8UQM|1|a|C|902

Current chains

Chain a

23S rRNA

Nearby chains

Chain v

50S ribosomal protein L16