IL_8UQP_012
3D structure
- PDB id
- 8UQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8UQP|1|D|U|173
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UQP_012 not in the Motif Atlas
- Homologous match to IL_5J7L_012
- Geometric discrepancy: 0.1297
- The information below is about IL_5J7L_012
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.6
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8UQP|1|D|G|147
8UQP|1|D|G|148
8UQP|1|D|A|149
8UQP|1|D|U|150
8UQP|1|D|A|151
8UQP|1|D|A|152
8UQP|1|D|C|153
*
8UQP|1|D|G|168
8UQP|1|D|C|169
8UQP|1|D|U|170
8UQP|1|D|A|171
8UQP|1|D|A|172
8UQP|1|D|U|173
8UQP|1|D|A|174
8UQP|1|D|C|175
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S20
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