IL_8UQP_020

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UQP_020 not in the Motif Atlas

Geometric match to IL_6CZR_359

Geometric discrepancy: 0.2183

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8UQP|1|D|U|409
8UQP|1|D|G|410
8UQP|1|D|A|411
8UQP|1|D|A|412
8UQP|1|D|G|413
8UQP|1|D|A|414
8UQP|1|D|A|415
8UQP|1|D|G|416
*
8UQP|1|D|U|427
8UQP|1|D|G|428
8UQP|1|D|U|429
8UQP|1|D|A|430
8UQP|1|D|A|431
8UQP|1|D|A|432
8UQP|1|D|G|433

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4