IL_8UQP_087
3D structure
- PDB id
- 8UQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8UQP|1|a|G|776, 8UQP|1|a|A|788, 8UQP|1|a|A|789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UQP_087 not in the Motif Atlas
- Homologous match to IL_5J7L_265
- Geometric discrepancy: 0.0748
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8UQP|1|a|G|775
8UQP|1|a|G|776
8UQP|1|a|G|777
*
8UQP|1|a|C|787
8UQP|1|a|A|788
8UQP|1|a|A|789
8UQP|1|a|U|790
8UQP|1|a|C|791
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L22
- Chain h
- 50S ribosomal protein L2
- Chain m
- 50S ribosomal protein L34
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