IL_8UQP_094
3D structure
- PDB id
- 8UQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UQP_094 not in the Motif Atlas
- Homologous match to IL_5J7L_272
- Geometric discrepancy: 0.0906
- The information below is about IL_5J7L_272
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
8UQP|1|a|G|864
8UQP|1|a|C|865
8UQP|1|a|A|866
8UQP|1|a|C|867
8UQP|1|a|U|868
*
8UQP|1|a|A|909
8UQP|1|a|A|910
8UQP|1|a|A|911
8UQP|1|a|C|912
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 5S ribosomal RNA; 5S rRNA
- Chain v
- 50S ribosomal protein L16
Coloring options: