IL_8UQP_100
3D structure
- PDB id
- 8UQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 8UQP|1|a|A|1156
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UQP_100 not in the Motif Atlas
- Homologous match to IL_4WF9_036
- Geometric discrepancy: 0.0579
- The information below is about IL_4WF9_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
8UQP|1|a|C|998
8UQP|1|a|U|999
8UQP|1|a|A|1000
8UQP|1|a|A|1001
8UQP|1|a|G|1002
*
8UQP|1|a|C|1153
8UQP|1|a|G|1154
8UQP|1|a|A|1155
8UQP|1|a|A|1156
8UQP|1|a|G|1157
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- Ribosomal protein L21
- Chain d
- 5S ribosomal RNA; 5S rRNA
- Chain f
- 50S ribosomal protein L30
- Chain z
- 50S ribosomal protein L20
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