IL_8UQP_113

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8UQP|1|a|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UQP_113 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0743

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8UQP|1|a|C|1208
8UQP|1|a|U|1209
8UQP|1|a|G|1210
8UQP|1|a|C|1211
8UQP|1|a|G|1212
8UQP|1|a|A|1213
8UQP|1|a|A|1214
8UQP|1|a|G|1215
*
8UQP|1|a|U|1234
8UQP|1|a|G|1235
8UQP|1|a|G|1236
8UQP|1|a|A|1237
8UQP|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain z

50S ribosomal protein L20