IL_8UQP_161

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UQP_161 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.5146

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8UQP|1|a|G|2110
8UQP|1|a|U|2111
8UQP|1|a|G|2112
8UQP|1|a|U|2113
8UQP|1|a|A|2114
8UQP|1|a|G|2115
8UQP|1|a|G|2116
8UQP|1|a|A|2117
8UQP|1|a|U|2118
8UQP|1|a|A|2119
8UQP|1|a|G|2120
8UQP|1|a|G|2121
*
8UQP|1|a|C|2177
8UQP|1|a|C|2178
8UQP|1|a|C|2179

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA