IL_8UQP_192

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UQP_192 not in the Motif Atlas

Homologous match to IL_5J7L_359

Geometric discrepancy: 0.064

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8UQP|1|d|C|71
8UQP|1|d|G|72
8UQP|1|d|A|73
8UQP|1|d|U|74
8UQP|1|d|G|75
8UQP|1|d|G|76
8UQP|1|d|U|77
8UQP|1|d|A|78
8UQP|1|d|G|79
*
8UQP|1|d|C|97
8UQP|1|d|G|98
8UQP|1|d|A|99
8UQP|1|d|G|100
8UQP|1|d|A|101
8UQP|1|d|G|102
8UQP|1|d|U|103
8UQP|1|d|A|104
8UQP|1|d|G|105

Current chains

Chain d

5S rRNA

Nearby chains

Chain 4

50S ribosomal protein L25

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain v

50S ribosomal protein L16