IL_8URH_109

3D structure

PDB id

8URH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

8URH|1|a|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URH_109 not in the Motif Atlas

Homologous match to IL_6PRV_002

Geometric discrepancy: 0.1679

The information below is about IL_6PRV_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8URH|1|a|G|1087
8URH|1|a|A|1088
8URH|1|a|A|1089
8URH|1|a|A|1090
*
8URH|1|a|U|1101
8URH|1|a|C|1102

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L11

Chain q

50S ribosomal protein L36