IL_8URH_162

3D structure

PDB id

8URH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

8URH|1|a|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8URH|1|a|G|2123
8URH|1|a|G|2124
8URH|1|a|G|2125
8URH|1|a|A|2126
8URH|1|a|G|2127
*
8URH|1|a|C|2161
8URH|1|a|G|2162
8URH|1|a|A|2163
8URH|1|a|C|2164
8URH|1|a|C|2165
8URH|1|a|U|2166
8URH|1|a|U|2167
8URH|1|a|G|2168
8URH|1|a|A|2169
8URH|1|a|A|2170
8URH|1|a|A|2171
8URH|1|a|U|2172
8URH|1|a|A|2173
8URH|1|a|C|2174
8URH|1|a|C|2175

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA