IL_8URI_046

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8URI|1|D|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URI_046 not in the Motif Atlas

Geometric match to IL_5J7L_046

Geometric discrepancy: 0.1274

The information below is about IL_5J7L_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8URI|1|D|G|1048
8URI|1|D|U|1049
8URI|1|D|G|1050
*
8URI|1|D|C|1208
8URI|1|D|C|1209

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14