IL_8URI_075

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URI_075 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2466

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8URI|1|a|C|274
8URI|1|a|C|275
8URI|1|a|U|276
8URI|1|a|G|277
8URI|1|a|A|278
8URI|1|a|A|279
8URI|1|a|U|280
8URI|1|a|C|281
*
8URI|1|a|G|359
8URI|1|a|U|360
8URI|1|a|G|361
8URI|1|a|A|362
8URI|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains