IL_8URI_123

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8URI|1|a|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URI_123 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.0894

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8URI|1|a|C|1417
8URI|1|a|G|1418
8URI|1|a|A|1419
8URI|1|a|A|1420
8URI|1|a|G|1421
*
8URI|1|a|C|1577
8URI|1|a|U|1578
8URI|1|a|A|1579
8URI|1|a|A|1580
8URI|1|a|G|1581

Current chains

Chain a

23S rRNA

Nearby chains