IL_8URI_162

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

8URI|1|a|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8URI|1|a|G|2123
8URI|1|a|G|2124
8URI|1|a|G|2125
8URI|1|a|A|2126
8URI|1|a|G|2127
*
8URI|1|a|C|2161
8URI|1|a|G|2162
8URI|1|a|A|2163
8URI|1|a|C|2164
8URI|1|a|C|2165
8URI|1|a|U|2166
8URI|1|a|U|2167
8URI|1|a|G|2168
8URI|1|a|A|2169
8URI|1|a|A|2170
8URI|1|a|A|2171
8URI|1|a|U|2172
8URI|1|a|A|2173
8URI|1|a|C|2174
8URI|1|a|C|2175

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA